Variant report

Variant	rs72811055
Chromosome Location	chr10:98070455-98070456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr10:98069505-98070513	H1-hESC	embryonic stem cell:	n/a	chr10:98070448-98070456

Variant related genes	Relation type
ENSG00000229418	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11593308	1.00[ASN][1000 genomes]
rs12570043	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779295	1.00[ASN][1000 genomes]
rs72811038	1.00[ASN][1000 genomes]
rs72811041	1.00[ASN][1000 genomes]
rs72829510	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72829522	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98066400-98072400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr10:98066400-98072600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr10:98066600-98071400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:98066800-98071000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:98066800-98072000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr10:98067000-98072400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:98067200-98076600	Enhancers	Fetal Thymus	thymus
8	chr10:98067600-98072400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr10:98067800-98071000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:98067800-98071200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:98068000-98070600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:98068600-98071200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:98068800-98070600	Enhancers	Colon Smooth Muscle	Colon
14	chr10:98068800-98070600	Enhancers	Stomach Smooth Muscle	stomach
15	chr10:98068800-98071200	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr10:98069600-98071200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr10:98069600-98072400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr10:98070200-98071000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr10:98070400-98070800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr10:98070400-98071000	Enhancers	Dnd41	blood
21	chr10:98070400-98071800	Active TSS	Thymus	Thymus
22	chr10:98070400-98072400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr10:98070400-98079800	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links