Variant report

Variant	rs72811098
Chromosome Location	chr2:99469048-99469049
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:99468880..99471646-chr2:99485398..99487819,3	MCF-7	breast:
2	chr2:99468965..99470613-chr2:99498482..99500430,2	MCF-7	breast:
3	chr2:99468266..99471087-chr2:99473957..99476591,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196872	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10153924	0.88[AMR][1000 genomes]
rs11123753	1.00[AMR][1000 genomes]
rs1574516	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17022034	0.82[EUR][1000 genomes]
rs4850887	1.00[AMR][1000 genomes]
rs4851156	1.00[AMR][1000 genomes]
rs4851157	1.00[AMR][1000 genomes]
rs4851158	1.00[AMR][1000 genomes]
rs4851159	1.00[AMR][1000 genomes]
rs66484268	0.81[EUR][1000 genomes]
rs67008211	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67983743	0.81[EUR][1000 genomes]
rs72811067	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72811068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72811073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72811074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72811075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72811079	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72811084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72811092	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72811102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813009	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813012	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813013	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813016	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813021	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv582517	chr2:99440917-99487972	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99453200-99473200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:99456200-99473000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:99463400-99485400	Weak transcription	Gastric	stomach

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