Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:99482631..99484233-chr2:99497565..99499483,2	MCF-7	breast:
2	chr2:99495810..99498238-chr2:99499497..99501291,2	MCF-7	breast:
3	chr2:99496861..99499359-chr2:99536872..99539467,2	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11123753	0.87[AMR][1000 genomes]
rs1574516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17022034	0.82[EUR][1000 genomes]
rs4850887	0.87[AMR][1000 genomes]
rs4851156	0.87[AMR][1000 genomes]
rs4851157	0.87[AMR][1000 genomes]
rs4851158	0.87[AMR][1000 genomes]
rs4851159	0.87[AMR][1000 genomes]
rs66484268	0.81[EUR][1000 genomes]
rs67008211	0.98[EUR][1000 genomes]
rs67983743	0.81[EUR][1000 genomes]
rs72811067	1.00[EUR][1000 genomes]
rs72811068	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72811073	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72811074	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72811075	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72811079	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72811084	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72811092	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72811098	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72811102	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813003	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99485600-99499800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:99487600-99499400	Weak transcription	Gastric	stomach
3	chr2:99492000-99500400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:99496800-99501800	Enhancers	Esophagus	oesophagus
5	chr2:99497000-99497800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:99497200-99497800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:99497200-99498400	Enhancers	NHEK	skin
8	chr2:99497200-99499400	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr2:99497400-99498200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:99497600-99497800	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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