Variant report

Variant	rs72813324
Chromosome Location	chr2:76918971-76918972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13394764	0.92[EUR][1000 genomes]
rs13412306	0.96[EUR][1000 genomes]
rs13415879	0.92[EUR][1000 genomes]
rs6710019	0.90[EUR][1000 genomes]
rs6758844	0.88[EUR][1000 genomes]
rs72813325	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813384	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72813388	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72813390	0.92[EUR][1000 genomes]
rs72813391	0.92[EUR][1000 genomes]
rs72813392	0.90[EUR][1000 genomes]
rs72813393	0.90[EUR][1000 genomes]
rs72813396	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582235	chr2:76881210-76997763	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1006275	chr2:76885103-76929056	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1002822	chr2:76885103-76940701	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1010119	chr2:76904730-76949552	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1003119	chr2:76914457-76949552	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv1003325	chr2:76914457-76957491	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv582236	chr2:76914970-76929044	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76906000-76926600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:76916000-76927800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:76918400-76919000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr2:76918600-76919000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:76918600-76919400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:76918600-76927600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:76918800-76919600	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr2:76918800-76920200	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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