Variant report

Variant	rs72813388
Chromosome Location	chr2:76937122-76937123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13394764	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13412306	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13415879	1.00[EUR][1000 genomes]
rs6710019	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758844	0.96[EUR][1000 genomes]
rs72813324	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72813325	0.88[EUR][1000 genomes]
rs72813384	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72813391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72813392	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72813393	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72813396	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582235	chr2:76881210-76997763	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1002822	chr2:76885103-76940701	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1010119	chr2:76904730-76949552	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1003119	chr2:76914457-76949552	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1003325	chr2:76914457-76957491	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	nsv998226	chr2:76919605-76949552	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
7	nsv1002481	chr2:76919605-76957491	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv1012020	chr2:76921092-76946538	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
9	nsv1011976	chr2:76921664-76949315	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
10	nsv1001059	chr2:76921664-76949552	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	nsv1009416	chr2:76924371-76949315	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv1009850	chr2:76924371-76949552	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases
13	nsv1008460	chr2:76928121-76949552	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
14	nsv1013202	chr2:76928121-76956494	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
15	nsv999909	chr2:76928121-76957491	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
16	nsv582237	chr2:76929095-76949101	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
17	nsv582238	chr2:76929095-76949315	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
18	nsv874318	chr2:76929095-76956302	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
19	nsv582239	chr2:76935514-76948043	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
20	nsv582240	chr2:76935514-76949315	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
21	nsv582241	chr2:76935514-76956302	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
22	esv33650	chr2:76935740-76949563	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
23	nsv1012147	chr2:76936019-76957491	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
24	esv2762679	chr2:76936031-76957088	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76935200-76949800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:76936000-76938600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:76937000-76937200	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links