Variant report

Variant	rs72816169
Chromosome Location	chr10:89862351-89862352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17421823	1.00[AFR][1000 genomes]
rs61854374	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89856000-89864800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:89858600-89863200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr10:89860800-89864200	Enhancers	GM12878-XiMat	blood
4	chr10:89861000-89863800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr10:89861400-89863400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:89861600-89863000	Active TSS	Primary B cells from cord blood	blood
7	chr10:89861600-89868000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:89861800-89865000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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