Variant report

Variant	rs61854374
Chromosome Location	chr10:89835888-89835889
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72816169	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1042027	chr10:89822721-89851993	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89826400-89839200	Weak transcription	Fetal Lung	lung
2	chr10:89828200-89839400	Weak transcription	Left Ventricle	heart
3	chr10:89830400-89838600	Weak transcription	NHLF	lung
4	chr10:89831000-89836000	Weak transcription	Liver	Liver
5	chr10:89831000-89839000	Weak transcription	Lung	lung
6	chr10:89832200-89836200	Weak transcription	Spleen	Spleen
7	chr10:89832200-89849600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr10:89832400-89838400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:89832400-89842600	Weak transcription	Dnd41	blood
10	chr10:89833000-89836000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:89835000-89836800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:89835000-89837600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:89835400-89836400	Enhancers	Primary B cells from peripheral blood	blood
14	chr10:89835400-89837600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:89835600-89836200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:89835600-89836200	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr10:89835600-89836400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr10:89835600-89836400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr10:89835600-89836400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr10:89835600-89836600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr10:89835800-89836000	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr10:89835800-89836000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr10:89835800-89836000	Enhancers	Osteobl	bone
24	chr10:89835800-89836200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr10:89835800-89836200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:89835800-89836200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr10:89835800-89836200	Enhancers	Small Intestine	intestine
28	chr10:89835800-89836400	Enhancers	Pancreas	Pancrea
29	chr10:89835800-89836400	Enhancers	Psoas Muscle	Psoas
30	chr10:89835800-89836400	Flanking Active TSS	GM12878-XiMat	blood

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