Variant report

Variant	rs72816877
Chromosome Location	chr16:46735305-46735306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:46732778..46734710-chr16:46734762..46736460,2	K562	blood:
2	chr16:46734124..46735947-chr16:46738836..46740756,2	K562	blood:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10468399	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1651654	1.00[ASN][1000 genomes]
rs166161	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16948661	1.00[ASN][1000 genomes]
rs17189741	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17792604	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs183672	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341041	1.00[ASN][1000 genomes]
rs252721	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs252722	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28174	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28184	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28485103	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35444809	1.00[ASN][1000 genomes]
rs36310	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36312	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36462	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36464	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36471	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36472	0.92[EUR][1000 genomes]
rs36476	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36481	1.00[ASN][1000 genomes]
rs36483	1.00[ASN][1000 genomes]
rs40163	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40355	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41187	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4141491	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs415018	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs420865	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs42461	0.85[EUR][1000 genomes]
rs4401068	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4887592	1.00[ASN][1000 genomes]
rs4966606	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4966616	0.91[EUR][1000 genomes]
rs4967393	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59064826	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60500837	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66508669	1.00[ASN][1000 genomes]
rs66804065	1.00[ASN][1000 genomes]
rs67205347	1.00[ASN][1000 genomes]
rs67506574	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67611436	1.00[ASN][1000 genomes]
rs67789219	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68074363	1.00[ASN][1000 genomes]
rs698416	0.85[EUR][1000 genomes]
rs698418	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs700582	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs712816	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7186662	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7187475	1.00[ASN][1000 genomes]
rs7190713	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197033	1.00[ASN][1000 genomes]
rs7198951	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7205668	1.00[ASN][1000 genomes]
rs72816835	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs794279	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8044684	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8045353	1.00[ASN][1000 genomes]
rs8046748	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8051017	1.00[ASN][1000 genomes]
rs808434	1.00[ASN][1000 genomes]
rs808780	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808783	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799780	chr16:46386457-46875496	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1060734	chr16:46463770-46768102	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1064289	chr16:46463770-46801977	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv1059456	chr16:46463770-47307580	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv1066115	chr16:46463770-47318415	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
6	nsv1066048	chr16:46500740-46998694	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv542908	chr16:46500740-46998694	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	nsv1059147	chr16:46500740-47010960	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	nsv542909	chr16:46500740-47010960	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
10	nsv916976	chr16:46505597-46801868	Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
11	nsv526656	chr16:46539392-46846663	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
12	esv1792701	chr16:46709686-46751452	Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
13	nsv1059598	chr16:46721805-46762219	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
14	nsv542913	chr16:46721805-46762219	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
15	nsv1064272	chr16:46721805-46768134	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
16	nsv542914	chr16:46721805-46768134	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
17	nsv1067038	chr16:46721805-46797514	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
18	nsv1066472	chr16:46721805-46801769	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
19	nsv1065253	chr16:46721805-46824369	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
20	nsv1059049	chr16:46721805-46859239	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
21	nsv1061651	chr16:46721805-46915511	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
22	nsv1060982	chr16:46721805-46938858	Enhancers Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46724800-46742000	Weak transcription	Right Ventricle	heart
2	chr16:46725000-46738800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr16:46725000-46739200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr16:46725000-46744400	Weak transcription	Psoas Muscle	Psoas
5	chr16:46725200-46738800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr16:46725400-46739400	Weak transcription	Placenta	Placenta
7	chr16:46725600-46736000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr16:46725600-46752200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr16:46725800-46735800	Weak transcription	Fetal Kidney	kidney
10	chr16:46725800-46736400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr16:46725800-46737400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr16:46726000-46735800	Weak transcription	Fetal Brain Male	brain
13	chr16:46726000-46736000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr16:46726200-46736000	Weak transcription	Fetal Intestine Small	intestine
15	chr16:46726200-46743200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr16:46730000-46738000	Weak transcription	HSMM	muscle
17	chr16:46730200-46738000	Weak transcription	NH-A	brain
18	chr16:46730400-46737200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr16:46730600-46736000	Weak transcription	Hela-S3	cervix
20	chr16:46730600-46737400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr16:46731200-46735600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr16:46731200-46755800	Weak transcription	Fetal Muscle Leg	muscle
23	chr16:46731400-46746000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr16:46731400-46746400	Weak transcription	Primary B cells from cord blood	blood
25	chr16:46731600-46737400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr16:46731600-46746000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr16:46731800-46737800	Weak transcription	NHLF	lung
28	chr16:46731800-46738000	Weak transcription	Left Ventricle	heart
29	chr16:46731800-46745000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr16:46732600-46737400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr16:46732600-46737400	Weak transcription	Fetal Intestine Large	intestine
32	chr16:46732600-46738600	Weak transcription	NHEK	skin
33	chr16:46732600-46740400	Weak transcription	HepG2	liver
34	chr16:46732600-46740800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr16:46732800-46738800	Weak transcription	A549	lung
36	chr16:46732800-46745600	Weak transcription	GM12878-XiMat	blood
37	chr16:46733200-46736400	Weak transcription	HUVEC	blood vessel
38	chr16:46733400-46736200	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr16:46733400-46737800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr16:46733400-46737800	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr16:46733400-46737800	Weak transcription	Dnd41	blood
42	chr16:46733400-46738600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr16:46733400-46738800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr16:46733400-46739200	Weak transcription	K562	blood
45	chr16:46733400-46743400	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr16:46733400-46745000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr16:46733600-46738800	Weak transcription	HMEC	breast
48	chr16:46733600-46739800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr16:46734000-46738600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr16:46734400-46736200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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