Variant report

Variant	rs72818903
Chromosome Location	chr10:98373300-98373301
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:98360613..98362809-chr10:98373002..98374950,2	K562	blood:
2	chr10:98366804..98369956-chr10:98370785..98374405,6	K562	blood:
3	chr10:98372394..98374938-chr10:98530168..98532928,2	MCF-7	breast:
4	chr10:98372033..98373765-chr10:98376062..98378595,2	MCF-7	breast:
5	chr10:98345541..98351057-chr10:98372487..98376675,6	K562	blood:
6	chr10:98367008..98370019-chr10:98371148..98375452,4	K562	blood:
7	chr10:98346216..98350490-chr10:98369688..98376085,7	K562	blood:
8	chr10:98346219..98349334-chr10:98373001..98374910,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000077147	Chromatin interaction
ENSG00000155629	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2060559	1.00[EUR][1000 genomes]
rs57652138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59362622	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72816995	1.00[EUR][1000 genomes]
rs72817002	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72818904	1.00[EUR][1000 genomes]
rs72818908	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv895909	chr10:98354924-98382165	Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98348000-98373600	Weak transcription	Left Ventricle	heart
2	chr10:98350800-98395600	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr10:98352400-98378600	Strong transcription	Liver	Liver
4	chr10:98352400-98399400	Strong transcription	Primary B cells from peripheral blood	blood
5	chr10:98352600-98403000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:98353000-98388400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:98353000-98403000	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:98354600-98388600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:98357800-98382000	Strong transcription	GM12878-XiMat	blood
10	chr10:98359400-98373400	Weak transcription	Right Ventricle	heart
11	chr10:98360400-98392800	Weak transcription	Thymus	Thymus
12	chr10:98362200-98389200	Strong transcription	Primary B cells from cord blood	blood
13	chr10:98362600-98373600	Weak transcription	Lung	lung
14	chr10:98363800-98392600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:98365600-98374200	Enhancers	Fetal Intestine Large	intestine
16	chr10:98365600-98374400	Enhancers	Fetal Intestine Small	intestine
17	chr10:98366000-98388400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:98366400-98373400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:98366600-98392600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:98367200-98375000	Enhancers	Stomach Mucosa	stomach
21	chr10:98367200-98376200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:98367400-98375000	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr10:98367400-98376200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr10:98367400-98418600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr10:98368400-98373600	Weak transcription	HSMM	muscle
26	chr10:98368800-98377800	Weak transcription	Brain Anterior Caudate	brain
27	chr10:98369000-98373400	Weak transcription	HSMMtube	muscle
28	chr10:98370000-98373600	Weak transcription	Gastric	stomach
29	chr10:98370600-98375800	Weak transcription	Ovary	ovary
30	chr10:98370800-98373600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:98370800-98378600	Weak transcription	Brain Substantia Nigra	brain
32	chr10:98371000-98378800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr10:98371000-98382600	Strong transcription	Spleen	Spleen
34	chr10:98371000-98388600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr10:98371000-98389000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:98371200-98373600	Weak transcription	Small Intestine	intestine
37	chr10:98371200-98375000	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr10:98371800-98378600	Weak transcription	Colonic Mucosa	Colon
39	chr10:98372200-98377400	Weak transcription	Brain Hippocampus Middle	brain
40	chr10:98372200-98388600	Strong transcription	Primary hematopoietic stem cells	blood
41	chr10:98372400-98373400	Weak transcription	A549	lung
42	chr10:98372400-98375400	Weak transcription	Adipose Nuclei	Adipose
43	chr10:98372600-98373400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr10:98372600-98373600	Enhancers	Duodenum Mucosa	Duodenum
45	chr10:98372600-98373600	Weak transcription	HepG2	liver
46	chr10:98372600-98376000	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr10:98372800-98373400	Weak transcription	Pancreas	Pancrea
48	chr10:98373200-98373600	Enhancers	Placenta	Placenta
49	chr10:98373200-98374000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr10:98373200-98375000	Enhancers	K562	blood

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