Variant report

Variant	rs72816995
Chromosome Location	chr10:98366797-98366798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2060559	1.00[EUR][1000 genomes]
rs57652138	1.00[EUR][1000 genomes]
rs59362622	0.90[EUR][1000 genomes]
rs72817002	1.00[EUR][1000 genomes]
rs72818903	1.00[EUR][1000 genomes]
rs72818904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72818908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72818982	0.83[AMR][1000 genomes]
rs72818985	0.83[AMR][1000 genomes]
rs72818986	0.83[AMR][1000 genomes]
rs72818991	0.83[AMR][1000 genomes]
rs72818995	0.83[AMR][1000 genomes]
rs72818996	0.83[AMR][1000 genomes]
rs72818997	0.83[AMR][1000 genomes]
rs72818998	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv895909	chr10:98354924-98382165	Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98348000-98373600	Weak transcription	Left Ventricle	heart
2	chr10:98349800-98367800	Weak transcription	Small Intestine	intestine
3	chr10:98350800-98395600	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:98352400-98378600	Strong transcription	Liver	Liver
5	chr10:98352400-98399400	Strong transcription	Primary B cells from peripheral blood	blood
6	chr10:98352600-98369400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:98352600-98403000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:98353000-98388400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:98353000-98403000	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr10:98354600-98388600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:98354800-98370600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:98356200-98367200	Weak transcription	Colonic Mucosa	Colon
13	chr10:98357600-98369200	Weak transcription	HepG2	liver
14	chr10:98357800-98382000	Strong transcription	GM12878-XiMat	blood
15	chr10:98358600-98370400	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr10:98358800-98369600	Weak transcription	Gastric	stomach
17	chr10:98359400-98373400	Weak transcription	Right Ventricle	heart
18	chr10:98360400-98392800	Weak transcription	Thymus	Thymus
19	chr10:98360600-98367400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:98360800-98369400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr10:98362200-98369000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:98362200-98389200	Strong transcription	Primary B cells from cord blood	blood
23	chr10:98362600-98367600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:98362600-98373600	Weak transcription	Lung	lung
25	chr10:98363000-98367200	Weak transcription	Stomach Mucosa	stomach
26	chr10:98363800-98392600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr10:98364800-98367600	Enhancers	Placenta	Placenta
28	chr10:98365600-98374200	Enhancers	Fetal Intestine Large	intestine
29	chr10:98365600-98374400	Enhancers	Fetal Intestine Small	intestine
30	chr10:98365800-98369800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:98365800-98370000	Enhancers	Ovary	ovary
32	chr10:98366000-98367600	Enhancers	Right Atrium	heart
33	chr10:98366000-98370600	Strong transcription	Spleen	Spleen
34	chr10:98366000-98388400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:98366200-98369400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr10:98366200-98370400	Strong transcription	Primary hematopoietic stem cells	blood
37	chr10:98366400-98367400	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr10:98366400-98367600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr10:98366400-98373400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:98366600-98366800	Enhancers	Hela-S3	cervix
41	chr10:98366600-98367000	Enhancers	HSMMtube	muscle
42	chr10:98366600-98367000	Enhancers	NH-A	brain
43	chr10:98366600-98367200	Weak transcription	Pancreas	Pancrea
44	chr10:98366600-98367600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr10:98366600-98368400	Enhancers	HSMM	muscle
46	chr10:98366600-98392600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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