Variant report

Variant	rs72818997
Chromosome Location	chr10:98399971-98399972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98398475..98400373-chr10:98590281..98591916,2	MCF-7	breast:
2	chr10:98397605..98402799-chr10:98589060..98594055,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196233	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs72816995	0.83[AMR][1000 genomes]
rs72818904	0.83[AMR][1000 genomes]
rs72818908	0.83[AMR][1000 genomes]
rs72818980	0.85[AMR][1000 genomes]
rs72818982	1.00[AMR][1000 genomes]
rs72818985	1.00[AMR][1000 genomes]
rs72818986	1.00[AMR][1000 genomes]
rs72818991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72818995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72818996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72818998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv7502	chr10:98384703-98429505	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98352600-98403000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr10:98353000-98403000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr10:98367400-98418600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:98381600-98408200	Weak transcription	Lung	lung
5	chr10:98385200-98400800	Weak transcription	Pancreas	Pancrea
6	chr10:98387000-98410200	Weak transcription	Gastric	stomach
7	chr10:98390600-98400800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:98392200-98400200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:98393000-98408000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:98393200-98400000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:98393200-98400600	Strong transcription	GM12878-XiMat	blood
12	chr10:98394400-98402400	Weak transcription	Placenta	Placenta
13	chr10:98396200-98404400	Strong transcription	Primary B cells from cord blood	blood
14	chr10:98396400-98401000	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:98396400-98407800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr10:98396600-98400800	Weak transcription	HSMMtube	muscle
17	chr10:98397000-98400200	Strong transcription	Spleen	Spleen
18	chr10:98397000-98401200	Weak transcription	Ovary	ovary
19	chr10:98397400-98400000	Strong transcription	Primary hematopoietic stem cells	blood
20	chr10:98397600-98400200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:98397600-98401800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr10:98397600-98408200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr10:98398200-98400200	Enhancers	Fetal Thymus	thymus
24	chr10:98398400-98400200	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr10:98398400-98410400	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr10:98398600-98400600	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr10:98399400-98403400	Genic enhancers	Primary B cells from peripheral blood	blood
28	chr10:98399600-98400000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:98399600-98400000	Enhancers	Brain Anterior Caudate	brain
30	chr10:98399600-98400200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:98399600-98400800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:98399600-98401000	Enhancers	Fetal Brain Male	brain
33	chr10:98399600-98401000	Enhancers	K562	blood
34	chr10:98399600-98401200	Enhancers	Fetal Intestine Large	intestine
35	chr10:98399800-98400600	Weak transcription	Liver	Liver
36	chr10:98399800-98401200	Enhancers	Fetal Intestine Small	intestine
37	chr10:98399800-98401200	Enhancers	HepG2	liver
38	chr10:98399800-98418200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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