Variant report

Variant	rs72820816
Chromosome Location	chr5:148100135-148100136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10071589	1.00[EUR][1000 genomes]
rs11953886	1.00[EUR][1000 genomes]
rs2895773	1.00[EUR][1000 genomes]
rs4269282	1.00[EUR][1000 genomes]
rs55788315	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55792946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55939907	1.00[EUR][1000 genomes]
rs56296220	1.00[EUR][1000 genomes]
rs72820809	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72820820	1.00[EUR][1000 genomes]
rs72820822	1.00[EUR][1000 genomes]
rs72837412	0.90[EUR][1000 genomes]
rs72837414	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72837416	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72837435	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7715328	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023832	chr5:147920935-148110926	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv537917	chr5:147920935-148110926	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv883021	chr5:148060817-148182123	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148098800-148100200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:148099000-148100600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:148099200-148100400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:148099200-148100600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:148099200-148100800	Enhancers	Fetal Lung	lung
6	chr5:148099400-148100200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr5:148099400-148100200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:148099400-148100400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:148099600-148100400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:148099600-148100600	Enhancers	Brain Hippocampus Middle	brain
11	chr5:148099600-148102600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:148099800-148100200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:148100000-148100400	Enhancers	Brain Angular Gyrus	brain
14	chr5:148100000-148100600	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links