Variant report

Variant	rs72837416
Chromosome Location	chr5:148014116-148014117
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10071589	1.00[EUR][1000 genomes]
rs11953886	1.00[EUR][1000 genomes]
rs2895773	1.00[EUR][1000 genomes]
rs4269282	1.00[EUR][1000 genomes]
rs55788315	1.00[EUR][1000 genomes]
rs55792946	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55939907	1.00[EUR][1000 genomes]
rs56296220	1.00[EUR][1000 genomes]
rs72820809	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72820816	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72820820	1.00[EUR][1000 genomes]
rs72820822	1.00[EUR][1000 genomes]
rs72837412	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72837414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72837435	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7715328	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023832	chr5:147920935-148110926	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv537917	chr5:147920935-148110926	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148006800-148015800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr5:148011800-148015200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:148012600-148014800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:148012600-148024800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:148012800-148014800	Weak transcription	Fetal Intestine Small	intestine
6	chr5:148012800-148015000	Weak transcription	Fetal Intestine Large	intestine
7	chr5:148012800-148015600	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:148012800-148017400	Weak transcription	K562	blood
9	chr5:148013800-148014200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr5:148013800-148016600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr5:148014000-148014400	Enhancers	Small Intestine	intestine
12	chr5:148014000-148016400	Enhancers	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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