Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10736066	0.81[ASN][1000 genomes]
rs1417257	0.81[ASN][1000 genomes]
rs1538832	0.81[ASN][1000 genomes]
rs17347260	0.81[ASN][1000 genomes]
rs17433251	0.81[ASN][1000 genomes]
rs1772181	0.81[ASN][1000 genomes]
rs1772186	0.81[ASN][1000 genomes]
rs1772188	0.81[ASN][1000 genomes]
rs2258946	0.81[ASN][1000 genomes]
rs2421705	0.81[ASN][1000 genomes]
rs2421706	0.81[ASN][1000 genomes]
rs61743258	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61874668	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61874670	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61874701	0.81[ASN][1000 genomes]
rs61876142	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876145	0.93[EUR][1000 genomes]
rs61876148	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876151	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583792	0.81[ASN][1000 genomes]
rs7089495	0.81[ASN][1000 genomes]
rs72823162	0.81[ASN][1000 genomes]
rs7912830	0.81[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs72823110	TNKS2	cis	Artery Aorta	GTEx
rs72823110	TNKS2	cis	Thyroid	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93472800-93484200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search: