Variant report

Variant	rs61876145
Chromosome Location	chr10:93449413-93449414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93444389..93447006-chr10:93448004..93451081,3	K562	blood:
2	chr10:93444232..93446401-chr10:93448282..93451081,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs61743258	0.92[EUR][1000 genomes]
rs61874668	0.89[EUR][1000 genomes]
rs61874670	0.89[EUR][1000 genomes]
rs61876142	0.94[EUR][1000 genomes]
rs61876148	0.92[EUR][1000 genomes]
rs61876151	0.93[EUR][1000 genomes]
rs72823110	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895892	chr10:93432632-93470167	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs61876145	TNKS2	cis	Artery Aorta	GTEx
rs61876145	TNKS2	cis	Thyroid	GTEx

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:93439400-93449600	Weak transcription	Aorta	Aorta
3	chr10:93441600-93449800	Weak transcription	HSMMtube	muscle
4	chr10:93442000-93449800	Weak transcription	Fetal Brain Male	brain
5	chr10:93442400-93449800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:93444400-93449600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:93444400-93449800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:93444600-93449600	Weak transcription	Osteobl	bone
9	chr10:93445000-93449600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:93445000-93449600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:93445000-93449600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:93445000-93449600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:93445000-93449600	Weak transcription	NHDF-Ad	bronchial
14	chr10:93445000-93449600	Weak transcription	NHLF	lung
15	chr10:93447200-93451600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr10:93447400-93452000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:93448800-93449800	Enhancers	Liver	Liver
18	chr10:93448800-93450200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:93448800-93450200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:93448800-93452000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:93449000-93450200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:93449000-93450400	Enhancers	Gastric	stomach
23	chr10:93449400-93450200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr10:93449400-93450200	Enhancers	Hela-S3	cervix
25	chr10:93449400-93450200	Enhancers	HSMM	muscle
26	chr10:93449400-93450400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:93449400-93452200	Enhancers	HMEC	breast
28	chr10:93449400-93453000	Enhancers	NHEK	skin

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