Variant report

Variant	rs7282315
Chromosome Location	chr21:17536545-17536546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10854413	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1543773	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs16995014	1.00[CHB][hapmap]
rs171190	0.85[CEU][hapmap]
rs2187061	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs239035	0.83[ASN][1000 genomes]
rs239036	1.00[CHB][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs239037	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs239043	0.82[CEU][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs2823625	1.00[TSI][hapmap]
rs2823626	1.00[CHB][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.83[ASN][1000 genomes]
rs2823627	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2823628	0.85[CEU][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs7283583	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.82[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73364817	1.00[ASN][1000 genomes]
rs8134163	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066951	chr21:17458978-17603160	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv544381	chr21:17458978-17603160	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1065028	chr21:17522588-17572535	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17527200-17553000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr21:17529000-17540600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr21:17535600-17537200	Weak transcription	Brain Substantia Nigra	brain
4	chr21:17535800-17537000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr21:17535800-17537200	Weak transcription	Brain Hippocampus Middle	brain
6	chr21:17536400-17539000	Weak transcription	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links