Variant report

Variant	rs72824949
Chromosome Location	chr16:81983737-81983738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55683592	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs72824935	1.00[AFR][1000 genomes]
rs72824938	1.00[AFR][1000 genomes]
rs72824941	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72824944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72824945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72829118	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72829120	1.00[AFR][1000 genomes]
rs72829122	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs72829125	1.00[AFR][1000 genomes]
rs72829128	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059532	chr16:81981559-81995177	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81925800-81992600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:81936000-81984600	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr16:81945000-81984600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr16:81946200-81985200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr16:81952800-81984600	Strong transcription	Liver	Liver
6	chr16:81954800-81991800	Weak transcription	Fetal Thymus	thymus
7	chr16:81959600-81983800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr16:81961600-81984600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr16:81962600-81995800	Weak transcription	Small Intestine	intestine
10	chr16:81963000-81984600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr16:81967400-81984600	Weak transcription	Placenta	Placenta
12	chr16:81968200-81984200	Strong transcription	Primary hematopoietic stem cells	blood
13	chr16:81970200-81990800	Weak transcription	Pancreas	Pancrea
14	chr16:81970800-81991200	Weak transcription	Thymus	Thymus
15	chr16:81970800-81994600	Weak transcription	Fetal Intestine Large	intestine
16	chr16:81971600-81984600	Weak transcription	Left Ventricle	heart
17	chr16:81972200-81993200	Weak transcription	Fetal Kidney	kidney
18	chr16:81973200-81984600	Weak transcription	Fetal Intestine Small	intestine
19	chr16:81975600-81984800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr16:81976800-81984600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr16:81981800-81985400	ZNF genes & repeats	Primary B cells from cord blood	blood
22	chr16:81982000-81985000	ZNF genes & repeats	GM12878-XiMat	blood
23	chr16:81982000-81985600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
24	chr16:81982000-81986800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
25	chr16:81982400-81987000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr16:81982600-81984400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr16:81982600-81984600	Weak transcription	Spleen	Spleen
28	chr16:81982600-81990200	Weak transcription	Lung	lung
29	chr16:81982600-81991200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr16:81982600-81996600	Weak transcription	Fetal Stomach	stomach
31	chr16:81982600-82007000	Weak transcription	Gastric	stomach
32	chr16:81982800-81984600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr16:81982800-81985400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
34	chr16:81983000-81984600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr16:81983000-81984600	Weak transcription	Adipose Nuclei	Adipose
36	chr16:81983000-81985400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr16:81983200-81984600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr16:81983200-81985400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood

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