Variant report

Variant	rs72829128
Chromosome Location	chr16:81997142-81997143
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55683592	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72824935	1.00[AFR][1000 genomes]
rs72824938	1.00[AFR][1000 genomes]
rs72824941	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs72824944	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs72824945	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs72824949	1.00[AFR][1000 genomes]
rs72829118	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs72829120	1.00[AFR][1000 genomes]
rs72829122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72829125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81982600-82007000	Weak transcription	Gastric	stomach
2	chr16:81993400-81997200	Weak transcription	Lung	lung
3	chr16:81993400-81999600	Weak transcription	Liver	Liver
4	chr16:81994800-82000800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr16:81995600-81997200	Weak transcription	GM12878-XiMat	blood
6	chr16:81995600-81997200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr16:81995600-81997600	Weak transcription	Primary B cells from cord blood	blood
8	chr16:81996400-81998400	Weak transcription	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links