Variant report

Variant	rs72825194
Chromosome Location	chr17:37616064-37616065
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:37604386..37611889-chr17:37616048..37620931,25	K562	blood:
2	chr17:37615177..37617856-chr19:59063174..59065856,2	MCF-7	breast:
3	chr17:37604313..37610125-chr17:37615155..37621784,15	MCF-7	breast:
4	chr17:37605291..37610010-chr17:37614517..37620203,14	MCF-7	breast:
5	chr17:37604291..37611614-chr17:37614953..37621274,26	K562	blood:

Variant related genes	Relation type
ENSG00000130724	Chromatin interaction
ENSG00000125686	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs16965088	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16965115	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16968717	0.91[EUR][1000 genomes]
rs16968720	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34249490	0.87[ASN][1000 genomes]
rs4412996	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4611492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55927957	0.82[EUR][1000 genomes]
rs55938401	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56102014	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56143149	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56161258	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56236848	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56257093	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56301513	1.00[AFR][1000 genomes]
rs57009492	0.81[AMR][1000 genomes]
rs58195267	0.81[EUR][1000 genomes]
rs59085142	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59110119	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59837361	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59869016	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59925505	0.82[EUR][1000 genomes]
rs60171801	0.87[ASN][1000 genomes]
rs60403655	0.81[AMR][1000 genomes]
rs67466585	0.81[AMR][1000 genomes]
rs67819651	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67971355	0.87[ASN][1000 genomes]
rs7219814	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72823393	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72825105	0.91[EUR][1000 genomes]
rs72825116	0.82[EUR][1000 genomes]
rs72825130	0.85[EUR][1000 genomes]
rs72825148	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72825164	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72825178	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72825188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827103	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72827106	1.00[AFR][1000 genomes]
rs72827114	1.00[AFR][1000 genomes]
rs72827126	1.00[AFR][1000 genomes]
rs72827138	1.00[AFR][1000 genomes]
rs72827139	1.00[AFR][1000 genomes]
rs72827140	1.00[AFR][1000 genomes]
rs72827159	1.00[AFR][1000 genomes]
rs72827162	1.00[AFR][1000 genomes]
rs8076041	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
5	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
6	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
7	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
11	nsv532712	chr17:37521822-37768345	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
12	nsv1063848	chr17:37575622-37707592	Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37608400-37616800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr17:37608400-37617200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr17:37608600-37616800	Weak transcription	Hela-S3	cervix
4	chr17:37608600-37617200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr17:37608800-37616800	Weak transcription	Right Ventricle	heart
6	chr17:37610800-37616800	Weak transcription	K562	blood
7	chr17:37612000-37616400	Weak transcription	Liver	Liver
8	chr17:37614400-37616800	Weak transcription	HepG2	liver
9	chr17:37614400-37617000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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