Variant report

Variant	rs72826090
Chromosome Location	chr6:12113477-12113478
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12103778..12105799-chr6:12111875..12114584,2	K562	blood:
2	chr6:12111570..12113635-chr6:12113655..12115274,2	K562	blood:
3	chr6:12112214..12113885-chr6:12120290..12122311,2	MCF-7	breast:
4	chr6:12082609..12085210-chr6:12112679..12114634,2	K562	blood:
5	chr6:12112236..12116140-chr6:12116213..12118749,4	K562	blood:
6	chr6:12113082..12115965-chr6:12149000..12150576,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1126472	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2228220	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777770	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777771	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4407714	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380831	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394551	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870443	chr6:12096356-12125998	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12070800-12120400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:12071800-12120400	Weak transcription	HepG2	liver
3	chr6:12084800-12116600	Weak transcription	HSMMtube	muscle
4	chr6:12091000-12118800	Weak transcription	A549	lung
5	chr6:12091000-12130600	Weak transcription	Psoas Muscle	Psoas
6	chr6:12095600-12119200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:12103800-12119200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:12103800-12120400	Weak transcription	Small Intestine	intestine
9	chr6:12106000-12120600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:12106000-12120600	Weak transcription	Esophagus	oesophagus
11	chr6:12106200-12120400	Weak transcription	Fetal Kidney	kidney
12	chr6:12106600-12113800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:12106800-12120400	Weak transcription	Gastric	stomach
14	chr6:12107400-12120400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:12107400-12124800	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:12107600-12120800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:12107800-12120600	Weak transcription	Brain Angular Gyrus	brain
18	chr6:12108000-12117000	Weak transcription	Brain Substantia Nigra	brain
19	chr6:12108200-12120200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:12108400-12116600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:12108400-12116800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:12108400-12120400	Weak transcription	Colonic Mucosa	Colon
23	chr6:12108600-12120200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr6:12108600-12120400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:12109600-12115400	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr6:12109800-12114600	Strong transcription	Fetal Muscle Leg	muscle
27	chr6:12110200-12114000	Weak transcription	Primary B cells from cord blood	blood
28	chr6:12110200-12114200	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr6:12110200-12120400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr6:12110600-12114000	Enhancers	Fetal Heart	heart
31	chr6:12110600-12114400	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr6:12110800-12120400	Weak transcription	Hela-S3	cervix
33	chr6:12111000-12113800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:12111200-12116600	Weak transcription	Adipose Nuclei	Adipose
35	chr6:12111200-12116800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:12111200-12120400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:12111400-12120400	Weak transcription	Fetal Brain Male	brain
38	chr6:12111600-12113800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:12111600-12114400	Weak transcription	Fetal Thymus	thymus
40	chr6:12111800-12113800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:12111800-12113800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:12111800-12115800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr6:12111800-12116000	Weak transcription	Fetal Stomach	stomach
44	chr6:12111800-12116600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:12111800-12116600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:12112000-12114400	Weak transcription	Thymus	Thymus
47	chr6:12112000-12115800	Weak transcription	Liver	Liver
48	chr6:12112000-12116000	Weak transcription	Fetal Intestine Large	intestine
49	chr6:12112000-12116400	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr6:12112000-12116600	Weak transcription	Aorta	Aorta

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