Variant report

Variant	rs72827889
Chromosome Location	chr17:46539170-46539171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55682497	1.00[AFR][1000 genomes]
rs55786154	1.00[AFR][1000 genomes]
rs56314407	1.00[AFR][1000 genomes]
rs72827831	1.00[AFR][1000 genomes]
rs72827881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72829847	1.00[AFR][1000 genomes]
rs72829852	1.00[AFR][1000 genomes]
rs72829860	1.00[AFR][1000 genomes]
rs72829861	1.00[AFR][1000 genomes]
rs72829862	1.00[AFR][1000 genomes]
rs72829868	1.00[AFR][1000 genomes]
rs72829895	1.00[AFR][1000 genomes]
rs72831805	1.00[AFR][1000 genomes]
rs72831816	1.00[AFR][1000 genomes]
rs72831824	1.00[AFR][1000 genomes]
rs72831829	1.00[AFR][1000 genomes]
rs72831830	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46535000-46540800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr17:46535200-46540200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr17:46535200-46540200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr17:46535400-46540600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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