Variant report

Variant	rs72829847
Chromosome Location	chr17:46626484-46626485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:46620117-46628421	PANC-1	pancreas:	n/a	n/a
2	POLR2A	chr17:46616545-46629919	PANC-1	pancreas:	n/a	n/a
3	POLR2A	chr17:46622500-46628313	K562	blood:	n/a	n/a

Variant related genes	Relation type
HOXB-AS3	TF binding region
HOXB2	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55682497	1.00[AFR][1000 genomes]
rs55786154	1.00[AFR][1000 genomes]
rs56314407	1.00[AFR][1000 genomes]
rs72827831	1.00[AFR][1000 genomes]
rs72827889	1.00[AFR][1000 genomes]
rs72829852	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72829860	1.00[AFR][1000 genomes]
rs72829861	1.00[AFR][1000 genomes]
rs72829862	1.00[AFR][1000 genomes]
rs72829868	1.00[AFR][1000 genomes]
rs72829895	1.00[AFR][1000 genomes]
rs72831805	1.00[AFR][1000 genomes]
rs72831816	1.00[AFR][1000 genomes]
rs72831824	1.00[AFR][1000 genomes]
rs72831829	1.00[AFR][1000 genomes]
rs72831830	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases
3	nsv908577	chr17:46584900-46704536	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	343 gene(s)	inside rSNPs	diseases
4	nsv908578	chr17:46592413-46698710	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	335 gene(s)	inside rSNPs	diseases
5	nsv908579	chr17:46592413-46727289	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
6	nsv532113	chr17:46598247-47588570	Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	453 gene(s)	inside rSNPs	diseases
7	esv2758459	chr17:46602673-46836837	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	364 gene(s)	inside rSNPs	diseases
8	esv2758694	chr17:46602673-46836837	Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	364 gene(s)	inside rSNPs	diseases
9	nsv908580	chr17:46609103-46698710	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	335 gene(s)	inside rSNPs	diseases
10	nsv908581	chr17:46610646-46735520	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
11	nsv575480	chr17:46617019-46684929	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
12	nsv908582	chr17:46617019-46698710	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
13	nsv908583	chr17:46617019-46704536	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	342 gene(s)	inside rSNPs	diseases
14	nsv833471	chr17:46617787-46783345	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	356 gene(s)	inside rSNPs	diseases
15	nsv908584	chr17:46618926-46735520	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	348 gene(s)	inside rSNPs	diseases
16	nsv457822	chr17:46620402-46698710	Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
17	nsv575481	chr17:46620402-46698710	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
18	nsv457823	chr17:46620402-46704536	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	342 gene(s)	inside rSNPs	diseases
19	nsv575482	chr17:46620402-46704536	Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	342 gene(s)	inside rSNPs	diseases
20	nsv457824	chr17:46625519-46693491	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
21	nsv575483	chr17:46625519-46693491	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46621200-46629600	Weak transcription	Gastric	stomach
2	chr17:46621600-46628000	Weak transcription	Pancreas	Pancrea
3	chr17:46621600-46634400	Weak transcription	Hela-S3	cervix
4	chr17:46621800-46627600	Weak transcription	Spleen	Spleen
5	chr17:46622400-46626600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr17:46622800-46627400	Weak transcription	Placenta	Placenta
7	chr17:46623200-46627400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr17:46623800-46630800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr17:46624000-46629800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr17:46624200-46626800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr17:46624400-46626600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr17:46624400-46627000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr17:46624400-46627400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr17:46624600-46627000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr17:46624600-46631600	Weak transcription	Esophagus	oesophagus
16	chr17:46624800-46626800	Weak transcription	HSMMtube	muscle
17	chr17:46624800-46627400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr17:46625000-46627200	Bivalent/Poised TSS	Fetal Brain Male	brain
19	chr17:46625200-46626600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
20	chr17:46625200-46626800	Transcr. at gene 5' and 3'	K562	blood
21	chr17:46625200-46627400	Weak transcription	A549	lung
22	chr17:46625400-46626800	Enhancers	Primary hematopoietic stem cells	blood
23	chr17:46625400-46627200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr17:46625600-46626600	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr17:46625600-46626600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr17:46625600-46626600	Active TSS	Stomach Smooth Muscle	stomach
27	chr17:46625600-46626800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr17:46625600-46627000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr17:46625600-46627400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr17:46625600-46627400	Weak transcription	Colonic Mucosa	Colon
31	chr17:46625600-46627400	Bivalent Enhancer	NH-A	brain
32	chr17:46625600-46629600	Weak transcription	GM12878-XiMat	blood
33	chr17:46625600-46630200	Genic enhancers	Fetal Stomach	stomach
34	chr17:46625600-46631600	Weak transcription	Right Atrium	heart
35	chr17:46625800-46627000	Enhancers	HUVEC	blood vessel
36	chr17:46625800-46627200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr17:46626000-46626600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
38	chr17:46626000-46626600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr17:46626000-46626800	Bivalent Enhancer	Fetal Muscle Leg	muscle
40	chr17:46626000-46627000	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr17:46626000-46627800	Genic enhancers	HSMM	muscle
42	chr17:46626200-46626600	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr17:46626200-46626600	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr17:46626200-46626600	Bivalent Enhancer	Fetal Lung	lung
45	chr17:46626200-46626800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
46	chr17:46626200-46626800	Enhancers	Primary T cells from cord blood	blood
47	chr17:46626200-46626800	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr17:46626200-46626800	Genic enhancers	NHLF	lung
49	chr17:46626200-46627000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr17:46626200-46627000	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links