Variant report

Variant	rs72828024
Chromosome Location	chr10:110521818-110521819
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:110521566..110523973-chr10:110542269..110543820,2	MCF-7	breast:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10509876	0.85[EUR][1000 genomes]
rs10509877	0.98[EUR][1000 genomes]
rs10509878	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10509879	0.90[EUR][1000 genomes]
rs11591352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11591528	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11592511	0.98[EUR][1000 genomes]
rs11593059	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11593246	0.95[EUR][1000 genomes]
rs11594812	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11595273	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11596384	0.95[EUR][1000 genomes]
rs11596602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11598379	0.95[EUR][1000 genomes]
rs12245168	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12256452	0.98[EUR][1000 genomes]
rs12258219	0.94[EUR][1000 genomes]
rs12268140	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17696930	1.00[EUR][1000 genomes]
rs17697405	0.96[EUR][1000 genomes]
rs17698048	0.90[EUR][1000 genomes]
rs17698729	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17698968	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs17769395	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17769443	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17769499	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17769672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17769875	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17770358	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17770955	0.95[EUR][1000 genomes]
rs17771704	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs34633864	0.84[EUR][1000 genomes]
rs35274948	0.93[EUR][1000 genomes]
rs4258310	0.90[EUR][1000 genomes]
rs4333961	0.95[EUR][1000 genomes]
rs55787232	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55901720	0.95[EUR][1000 genomes]
rs56127946	0.95[EUR][1000 genomes]
rs56208412	0.96[EUR][1000 genomes]
rs59080228	0.89[EUR][1000 genomes]
rs60577972	0.96[EUR][1000 genomes]
rs60930604	0.92[EUR][1000 genomes]
rs61684874	0.95[EUR][1000 genomes]
rs6584895	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66533722	0.95[EUR][1000 genomes]
rs66584978	0.98[EUR][1000 genomes]
rs66596379	0.93[EUR][1000 genomes]
rs66619377	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66666352	0.94[EUR][1000 genomes]
rs66674244	0.96[EUR][1000 genomes]
rs66854714	0.95[EUR][1000 genomes]
rs67026641	0.93[EUR][1000 genomes]
rs67218870	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67273395	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67384732	0.96[EUR][1000 genomes]
rs67421416	0.93[EUR][1000 genomes]
rs67673940	0.95[EUR][1000 genomes]
rs67687537	0.95[EUR][1000 genomes]
rs67837870	0.93[EUR][1000 genomes]
rs68047861	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs68051059	0.95[EUR][1000 genomes]
rs7073419	0.95[EUR][1000 genomes]
rs7077406	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7077427	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7083281	0.98[EUR][1000 genomes]
rs7083659	0.95[EUR][1000 genomes]
rs7085866	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7091393	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7091974	0.98[EUR][1000 genomes]
rs7096295	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7100485	0.92[EUR][1000 genomes]
rs7100565	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72828019	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72828021	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72828022	0.96[EUR][1000 genomes]
rs72828032	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72828046	0.95[EUR][1000 genomes]
rs72828047	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72828048	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72828053	0.95[EUR][1000 genomes]
rs72828090	0.86[EUR][1000 genomes]
rs73344746	0.93[EUR][1000 genomes]
rs7905844	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7905973	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7920198	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050244	chr10:110279647-110779693	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv917125	chr10:110425573-111119776	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv492162	chr10:110440656-111089721	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1067661	chr10:110440715-111089466	Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv529130	chr10:110440715-111089466	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv3429369	chr10:110454775-110753351	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv2758240	chr10:110458987-110643496	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2759782	chr10:110458987-110643496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2750851	chr10:110503788-110905211	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110518800-110524000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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