Variant report

Variant	rs12268140
Chromosome Location	chr10:110463821-110463822
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10509876	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10509877	0.84[EUR][1000 genomes]
rs10509878	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11591352	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11591528	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11592511	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11593059	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11593246	0.82[EUR][1000 genomes]
rs11594812	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11595273	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11596384	0.82[EUR][1000 genomes]
rs11596602	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11598379	0.82[EUR][1000 genomes]
rs12245168	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12256452	0.84[EUR][1000 genomes]
rs12258219	0.80[EUR][1000 genomes]
rs17696930	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17697405	0.83[EUR][1000 genomes]
rs17769395	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17769443	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17769499	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17769672	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17769875	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17770358	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17770955	0.82[EUR][1000 genomes]
rs4333961	0.82[EUR][1000 genomes]
rs55787232	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55901720	0.82[EUR][1000 genomes]
rs56127946	0.82[EUR][1000 genomes]
rs56208412	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60577972	0.83[EUR][1000 genomes]
rs60930604	0.80[EUR][1000 genomes]
rs61684874	0.82[EUR][1000 genomes]
rs6584895	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66533722	0.82[EUR][1000 genomes]
rs66584978	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs66619377	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66666352	0.81[EUR][1000 genomes]
rs66674244	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66854714	0.82[EUR][1000 genomes]
rs67026641	0.80[EUR][1000 genomes]
rs67218870	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67273395	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67384732	0.83[EUR][1000 genomes]
rs67421416	0.80[EUR][1000 genomes]
rs67673940	0.82[EUR][1000 genomes]
rs67687537	0.82[EUR][1000 genomes]
rs68047861	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs68051059	0.82[EUR][1000 genomes]
rs7073419	0.82[EUR][1000 genomes]
rs7077406	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7077427	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7083281	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7083659	0.82[EUR][1000 genomes]
rs7085866	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7091393	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7091974	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7096295	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7100565	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72828019	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72828021	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72828022	0.83[EUR][1000 genomes]
rs72828024	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72828032	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72828046	0.82[EUR][1000 genomes]
rs72828047	0.84[EUR][1000 genomes]
rs72828048	0.84[EUR][1000 genomes]
rs72828053	0.82[EUR][1000 genomes]
rs7905844	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7905973	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7920198	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831983	chr10:110267919-110467318	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1050244	chr10:110279647-110779693	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv917125	chr10:110425573-111119776	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv1810619	chr10:110435038-110463874	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
5	esv1828557	chr10:110435038-110463874	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv492162	chr10:110440656-111089721	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1067661	chr10:110440715-111089466	Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv529130	chr10:110440715-111089466	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	esv3429369	chr10:110454775-110753351	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	esv2758240	chr10:110458987-110643496	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv2759782	chr10:110458987-110643496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110457800-110472400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:110463800-110464200	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links