Variant report

Variant	rs72829924
Chromosome Location	chr17:34047130-34047131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:33903959..33906487-chr17:34046885..34048555,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RASL10B-1	chr17:34046907-34047461	NONHSAT053116

Variant related genes	Relation type
ENSG00000108733	Chromatin interaction
ENSG00000006125	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1634683	1.00[AFR][1000 genomes]
rs178736	1.00[AFR][1000 genomes]
rs188959	1.00[AFR][1000 genomes]
rs225246	1.00[AFR][1000 genomes]
rs225256	1.00[AFR][1000 genomes]
rs225261	1.00[AFR][1000 genomes]
rs225264	1.00[AFR][1000 genomes]
rs225265	1.00[AFR][1000 genomes]
rs225267	1.00[AFR][1000 genomes]
rs225268	1.00[AFR][1000 genomes]
rs225270	1.00[AFR][1000 genomes]
rs225276	1.00[AFR][1000 genomes]
rs225283	1.00[AFR][1000 genomes]
rs225286	1.00[AFR][1000 genomes]
rs225288	1.00[AFR][1000 genomes]
rs226084	1.00[AFR][1000 genomes]
rs226087	1.00[AFR][1000 genomes]
rs226089	1.00[AFR][1000 genomes]
rs226090	1.00[AFR][1000 genomes]
rs2428464	1.00[AFR][1000 genomes]
rs2626625	1.00[AFR][1000 genomes]
rs4251726	1.00[AFR][1000 genomes]
rs4796098	1.00[AFR][1000 genomes]
rs6505485	1.00[AFR][1000 genomes]
rs6505486	1.00[AFR][1000 genomes]
rs7217378	1.00[AFR][1000 genomes]
rs7217533	1.00[AFR][1000 genomes]
rs72828042	1.00[AFR][1000 genomes]
rs72828065	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72829932	1.00[AFR][1000 genomes]
rs72829933	1.00[AFR][1000 genomes]
rs72829936	1.00[AFR][1000 genomes]
rs72829940	1.00[AFR][1000 genomes]
rs8064895	1.00[AFR][1000 genomes]
rs8072676	1.00[AFR][1000 genomes]
rs9912939	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
2	nsv908080	chr17:34027964-34054044	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33968000-34055800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:34018800-34050600	Weak transcription	Esophagus	oesophagus
3	chr17:34023200-34051600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr17:34024200-34056200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr17:34026600-34050200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr17:34032600-34055800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr17:34034800-34053400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr17:34034800-34055600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr17:34035400-34056200	Strong transcription	A549	lung
10	chr17:34035800-34053000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr17:34036000-34047400	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr17:34036000-34049000	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr17:34036000-34055600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr17:34036400-34052200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr17:34036600-34055800	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr17:34036800-34054800	Strong transcription	Primary B cells from peripheral blood	blood
17	chr17:34037000-34047400	Strong transcription	Primary B cells from cord blood	blood
18	chr17:34037000-34053000	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr17:34040000-34052800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr17:34040200-34055000	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr17:34040400-34047200	Weak transcription	Hela-S3	cervix
22	chr17:34040400-34049200	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr17:34040400-34054400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr17:34040600-34050800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr17:34040600-34054800	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr17:34040600-34055200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr17:34040600-34055600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr17:34040800-34047200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr17:34040800-34047600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr17:34040800-34050200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr17:34040800-34050600	Weak transcription	Stomach Mucosa	stomach
32	chr17:34040800-34053400	Strong transcription	Duodenum Mucosa	Duodenum
33	chr17:34040800-34054400	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr17:34040800-34054400	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr17:34040800-34055000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr17:34040800-34055000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr17:34041000-34050200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr17:34041400-34053000	Weak transcription	Right Atrium	heart
39	chr17:34042000-34047400	Strong transcription	NH-A	brain
40	chr17:34042000-34050600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr17:34042400-34053000	Strong transcription	K562	blood
42	chr17:34042600-34052000	Strong transcription	Fetal Muscle Leg	muscle
43	chr17:34042800-34052000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr17:34042800-34055400	Strong transcription	Primary T cells from cord blood	blood
45	chr17:34043000-34050400	Weak transcription	Brain Substantia Nigra	brain
46	chr17:34043000-34052600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr17:34043400-34047600	Strong transcription	Fetal Stomach	stomach
48	chr17:34043600-34052800	Strong transcription	HSMM	muscle
49	chr17:34043600-34053800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr17:34043800-34050600	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links