Variant report

Variant	rs72829940
Chromosome Location	chr17:34064264-34064265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34062986..34065668-chr17:34065728..34067673,2	K562	blood:
2	chr17:34057854..34059424-chr17:34062203..34064708,2	K562	blood:

Variant related genes	Relation type
ENSG00000141150	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10438814	0.85[EUR][1000 genomes]
rs1080352	0.85[EUR][1000 genomes]
rs11871358	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1634683	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17638867	0.88[EUR][1000 genomes]
rs178736	1.00[AFR][1000 genomes]
rs188959	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2011528	0.84[EUR][1000 genomes]
rs2011897	0.91[EUR][1000 genomes]
rs225244	0.81[EUR][1000 genomes]
rs225246	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs225249	0.81[EUR][1000 genomes]
rs225250	0.81[EUR][1000 genomes]
rs225252	0.81[EUR][1000 genomes]
rs225256	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs225257	0.81[EUR][1000 genomes]
rs225261	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs225264	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs225265	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs225267	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs225268	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs225270	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs225271	0.85[EUR][1000 genomes]
rs225274	0.85[EUR][1000 genomes]
rs225275	0.84[EUR][1000 genomes]
rs225276	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs225278	0.85[EUR][1000 genomes]
rs225279	0.86[EUR][1000 genomes]
rs225283	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs225286	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs225288	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs225298	0.81[EUR][1000 genomes]
rs225305	0.81[EUR][1000 genomes]
rs226084	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs226087	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs226089	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs226090	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2376177	0.81[EUR][1000 genomes]
rs2428464	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2523114	0.85[EUR][1000 genomes]
rs2523116	0.85[EUR][1000 genomes]
rs2626625	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2626626	0.85[EUR][1000 genomes]
rs3859282	0.85[EUR][1000 genomes]
rs3859284	0.85[EUR][1000 genomes]
rs3890900	0.81[EUR][1000 genomes]
rs4251726	1.00[AFR][1000 genomes]
rs4795086	0.82[EUR][1000 genomes]
rs4796098	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4796100	0.85[EUR][1000 genomes]
rs4796101	0.85[EUR][1000 genomes]
rs4796104	0.87[EUR][1000 genomes]
rs6505484	0.84[EUR][1000 genomes]
rs6505485	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6505486	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6505487	0.85[EUR][1000 genomes]
rs7208672	0.85[EUR][1000 genomes]
rs7210966	0.85[EUR][1000 genomes]
rs7211724	0.85[EUR][1000 genomes]
rs7213804	0.85[EUR][1000 genomes]
rs7214250	0.85[EUR][1000 genomes]
rs7214742	0.85[EUR][1000 genomes]
rs7217378	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7217533	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7221203	0.85[EUR][1000 genomes]
rs72828042	1.00[AFR][1000 genomes]
rs72828065	1.00[AFR][1000 genomes]
rs72829922	0.87[EUR][1000 genomes]
rs72829923	0.87[EUR][1000 genomes]
rs72829924	1.00[AFR][1000 genomes]
rs72829925	0.90[EUR][1000 genomes]
rs72829927	0.90[EUR][1000 genomes]
rs72829932	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72829933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72829936	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs8064895	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs8071584	0.85[EUR][1000 genomes]
rs8072676	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs8074800	0.82[EUR][1000 genomes]
rs8077826	0.85[EUR][1000 genomes]
rs9303690	0.85[EUR][1000 genomes]
rs9649	0.90[EUR][1000 genomes]
rs9912939	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34058600-34064600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr17:34059600-34067200	Weak transcription	Spleen	Spleen
3	chr17:34059600-34068000	Weak transcription	Right Ventricle	heart
4	chr17:34059800-34065000	Weak transcription	Brain Hippocampus Middle	brain
5	chr17:34060000-34064400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr17:34060000-34065200	Weak transcription	Brain Anterior Caudate	brain
7	chr17:34060000-34065600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr17:34060000-34065800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr17:34060000-34068000	Weak transcription	Right Atrium	heart
10	chr17:34060400-34068000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr17:34060600-34067400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr17:34060800-34067400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr17:34062600-34068000	Weak transcription	Lung	lung

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