Variant report

Variant	rs72843033
Chromosome Location	chr6:23307967-23307968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17208780	1.00[ASN][1000 genomes]
rs55759606	0.87[ASN][1000 genomes]
rs55895536	1.00[ASN][1000 genomes]
rs56394889	0.87[ASN][1000 genomes]
rs57492249	1.00[ASN][1000 genomes]
rs72841702	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601123	chr6:23260824-23358239	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830607	chr6:23302325-23446497	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23307000-23308600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:23307200-23308400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:23307800-23308000	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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