Variant report

Variant	rs72841702
Chromosome Location	chr6:23277382-23277383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17208780	1.00[ASN][1000 genomes]
rs4358613	0.95[EUR][1000 genomes]
rs4640880	0.96[EUR][1000 genomes]
rs55759606	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55895536	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56394889	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57492249	1.00[ASN][1000 genomes]
rs6456539	0.95[EUR][1000 genomes]
rs6914129	0.95[EUR][1000 genomes]
rs72843033	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348558	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601123	chr6:23260824-23358239	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2762583	chr6:23269960-23288544	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23277000-23277400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:23277000-23278000	Weak transcription	Brain Germinal Matrix	brain
3	chr6:23277200-23277800	Weak transcription	Fetal Kidney	kidney
4	chr6:23277200-23278600	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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