Variant report

Variant	rs6456539
Chromosome Location	chr6:23280302-23280303
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4358613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4461723	0.86[AFR][1000 genomes]
rs4463253	0.86[AFR][1000 genomes]
rs4640880	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55759606	0.83[EUR][1000 genomes]
rs56394889	0.83[EUR][1000 genomes]
rs6914129	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72841702	0.95[EUR][1000 genomes]
rs7739080	0.82[ASN][1000 genomes]
rs9348558	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601123	chr6:23260824-23358239	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2762583	chr6:23269960-23288544	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23278400-23281200	Weak transcription	Brain Germinal Matrix	brain
2	chr6:23278400-23282000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:23278400-23282400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:23278600-23281200	Weak transcription	Brain Angular Gyrus	brain
5	chr6:23278600-23282000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:23279400-23282000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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