Variant report

Variant	rs7739080
Chromosome Location	chr6:23281617-23281618
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs4358613	0.82[ASN][1000 genomes]
rs4640880	0.84[ASN][1000 genomes]
rs6456539	0.82[ASN][1000 genomes]
rs6900597	1.00[EUR][1000 genomes]
rs6914129	0.82[ASN][1000 genomes]
rs73739244	1.00[EUR][1000 genomes]
rs73742212	1.00[EUR][1000 genomes]
rs73742214	1.00[EUR][1000 genomes]
rs73742216	1.00[EUR][1000 genomes]
rs73742218	1.00[EUR][1000 genomes]
rs73742248	1.00[EUR][1000 genomes]
rs73742250	1.00[EUR][1000 genomes]
rs73742252	1.00[EUR][1000 genomes]
rs7751274	1.00[EUR][1000 genomes]
rs7751670	1.00[EUR][1000 genomes]
rs7751674	1.00[EUR][1000 genomes]
rs7751943	1.00[EUR][1000 genomes]
rs7772937	1.00[EUR][1000 genomes]
rs9348558	0.82[ASN][1000 genomes]
rs9466731	1.00[EUR][1000 genomes]
rs9466736	1.00[EUR][1000 genomes]
rs9466737	1.00[EUR][1000 genomes]
rs9466738	1.00[EUR][1000 genomes]
rs9466739	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601123	chr6:23260824-23358239	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2762583	chr6:23269960-23288544	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23278400-23282000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:23278400-23282400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:23278600-23282000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:23279400-23282000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:23281000-23282800	Enhancers	Fetal Muscle Leg	muscle
6	chr6:23281200-23282600	Enhancers	Brain Angular Gyrus	brain
7	chr6:23281400-23282000	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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