Variant report

Variant	rs9466739
Chromosome Location	chr6:23308913-23308914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs6900597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739244	1.00[EUR][1000 genomes]
rs73742212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742248	1.00[EUR][1000 genomes]
rs73742250	1.00[EUR][1000 genomes]
rs73742252	1.00[EUR][1000 genomes]
rs7739080	1.00[EUR][1000 genomes]
rs7751274	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7751670	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7751674	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7751943	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7772937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9466731	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9466736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9466737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9466738	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601123	chr6:23260824-23358239	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830607	chr6:23302325-23446497	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23308400-23309200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:23308400-23309200	Enhancers	NHEK	skin
3	chr6:23308600-23309200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:23308800-23309200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:23308800-23309200	Enhancers	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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