Variant report

Variant	rs72845306
Chromosome Location	chr2:126700538-126700539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:57970199..57971707-chr2:126700098..126701738,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108443	Chromatin interaction
ENSG00000108423	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11677894	0.85[EUR][1000 genomes]
rs11690490	0.81[EUR][1000 genomes]
rs11693289	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17688270	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1869745	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55649616	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55748091	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56094082	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56119302	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56155371	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56211536	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56217723	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72845326	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845328	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845329	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845330	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845332	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845333	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845335	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845336	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845337	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72845341	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72845345	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845348	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845351	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845355	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845358	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72845359	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845370	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72853517	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012762	chr2:125902993-126755660	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535915	chr2:125902993-126755660	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1000070	chr2:126138320-126915275	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1013181	chr2:126451639-127246965	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv997962	chr2:126464195-127234384	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1001995	chr2:126506739-127314488	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv534297	chr2:126506966-127245682	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv583009	chr2:126662415-126759423	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv834363	chr2:126696445-126887859	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:126700400-126701200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:126700400-126701200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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