Variant report

Variant	rs11677894
Chromosome Location	chr2:126733014-126733015
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:126731154..126733896-chr2:126735870..126737640,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11690490	0.83[AFR][1000 genomes]
rs11693289	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17688270	0.87[EUR][1000 genomes]
rs1869745	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28373022	0.83[AFR][1000 genomes]
rs4452146	0.83[AFR][1000 genomes]
rs55649616	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55748091	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56094082	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56119302	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56155371	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56211536	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56217723	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56356855	0.83[AFR][1000 genomes]
rs72845306	0.85[EUR][1000 genomes]
rs72845307	0.87[EUR][1000 genomes]
rs72845326	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72845328	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72845329	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72845330	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72845332	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72845333	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72845335	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72845336	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72845337	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72845341	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72845345	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72845348	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72845351	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72845355	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72845358	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72845359	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72845370	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72850604	0.83[AFR][1000 genomes]
rs72850606	0.83[AFR][1000 genomes]
rs72850607	0.83[AFR][1000 genomes]
rs72854229	0.83[AFR][1000 genomes]
rs72862424	0.83[AFR][1000 genomes]
rs72862425	0.83[AFR][1000 genomes]
rs72862455	0.83[AFR][1000 genomes]
rs72862463	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012762	chr2:125902993-126755660	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535915	chr2:125902993-126755660	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1000070	chr2:126138320-126915275	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1013181	chr2:126451639-127246965	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv997962	chr2:126464195-127234384	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1001995	chr2:126506739-127314488	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv534297	chr2:126506966-127245682	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv583009	chr2:126662415-126759423	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv834363	chr2:126696445-126887859	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:126732800-126733600	Enhancers	Fetal Heart	heart

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