Variant report

Variant	rs72862425
Chromosome Location	chr2:126787981-126787982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11677894	0.83[AFR][1000 genomes]
rs11690490	1.00[AFR][1000 genomes]
rs17695513	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28373022	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4452146	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs55704910	0.84[EUR][1000 genomes]
rs55977060	0.88[AMR][1000 genomes]
rs56356855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6542029	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72850604	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72850606	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72850607	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72853517	0.88[AMR][1000 genomes]
rs72854229	1.00[AFR][1000 genomes]
rs72854367	0.84[EUR][1000 genomes]
rs72854369	0.84[EUR][1000 genomes]
rs72862404	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72862424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862434	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72862440	0.82[EUR][1000 genomes]
rs72862444	0.82[EUR][1000 genomes]
rs72862455	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72862458	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72862463	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000070	chr2:126138320-126915275	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1013181	chr2:126451639-127246965	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv997962	chr2:126464195-127234384	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1001995	chr2:126506739-127314488	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv534297	chr2:126506966-127245682	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv834363	chr2:126696445-126887859	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv874993	chr2:126769538-126858204	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:126786600-126789600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr2:126786800-126788000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr2:126787000-126788800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:126787000-126788800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:126787800-126788600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:126787800-126789200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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