Variant report

Variant	rs72852133
Chromosome Location	chr2:145448293-145448294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr2:145448151-145448356	HepG2	liver:	n/a	n/a
2	JUN	chr2:145448273-145448473	H1-hESC	embryonic stem cell:	n/a	chr2:145448355-145448364

Variant related genes	Relation type
ENSG00000234940	TF binding region

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11685274	0.98[EUR][1000 genomes]
rs11689322	0.96[EUR][1000 genomes]
rs11689575	1.00[ASN][1000 genomes]
rs11691685	0.82[EUR][1000 genomes]
rs1559963	1.00[ASN][1000 genomes]
rs4384720	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57477957	1.00[ASN][1000 genomes]
rs57834922	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58504774	1.00[ASN][1000 genomes]
rs58811157	1.00[ASN][1000 genomes]
rs59042570	1.00[ASN][1000 genomes]
rs66537831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6718158	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6720379	1.00[ASN][1000 genomes]
rs67382063	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6752912	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756405	0.85[EUR][1000 genomes]
rs67963154	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs68017203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850698	0.94[EUR][1000 genomes]
rs72852115	0.96[EUR][1000 genomes]
rs72852118	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852120	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852122	1.00[EUR][1000 genomes]
rs72852128	1.00[EUR][1000 genomes]
rs72852130	1.00[EUR][1000 genomes]
rs72852135	1.00[EUR][1000 genomes]
rs72852137	1.00[EUR][1000 genomes]
rs72852150	0.85[EUR][1000 genomes]
rs72993904	1.00[ASN][1000 genomes]
rs72993910	1.00[ASN][1000 genomes]
rs72997876	1.00[ASN][1000 genomes]
rs72999719	1.00[ASN][1000 genomes]
rs72999723	1.00[ASN][1000 genomes]
rs72999734	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72999737	1.00[ASN][1000 genomes]
rs72999751	1.00[ASN][1000 genomes]
rs72999753	1.00[ASN][1000 genomes]
rs73001719	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73001730	1.00[ASN][1000 genomes]
rs73001732	1.00[ASN][1000 genomes]
rs73001735	1.00[ASN][1000 genomes]
rs73001749	1.00[ASN][1000 genomes]
rs73001751	1.00[ASN][1000 genomes]
rs73001753	1.00[ASN][1000 genomes]
rs73001755	1.00[ASN][1000 genomes]
rs73001758	1.00[ASN][1000 genomes]
rs73003700	1.00[ASN][1000 genomes]
rs73005508	1.00[ASN][1000 genomes]
rs73005510	1.00[ASN][1000 genomes]
rs73962039	1.00[ASN][1000 genomes]
rs73962041	1.00[ASN][1000 genomes]
rs73963904	1.00[ASN][1000 genomes]
rs7595770	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv529501	chr2:145257682-145485605	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv834397	chr2:145439528-145608628	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145438800-145452800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr2:145445600-145449000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:145446000-145449600	Enhancers	Monocytes-CD14+_RO01746	blood

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