Variant report

Variant	rs72854858
Chromosome Location	chr2:31281717-31281718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs4494792	0.86[AFR][1000 genomes]
rs56807379	0.83[AMR][1000 genomes]
rs58027920	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58823999	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60000683	0.83[AMR][1000 genomes]
rs60576941	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61507719	0.83[AMR][1000 genomes]
rs6706494	0.83[AMR][1000 genomes]
rs6737917	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72854807	0.94[AFR][1000 genomes]
rs72854810	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72854812	0.83[AMR][1000 genomes]
rs72854820	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72854827	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72854842	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72868783	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72868787	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7575804	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31278200-31283600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr2:31278200-31293000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:31278200-31310800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr2:31278600-31282600	Weak transcription	Fetal Kidney	kidney
5	chr2:31278800-31283000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr2:31278800-31306800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr2:31280800-31283200	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr2:31281000-31281800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:31281000-31290000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:31281400-31282000	Enhancers	Fetal Lung	lung
11	chr2:31281600-31282200	Weak transcription	Fetal Intestine Small	intestine
12	chr2:31281600-31282800	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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