Variant report

Variant	rs58027920
Chromosome Location	chr2:31270932-31270933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs4494792	0.89[AFR][1000 genomes]
rs58440641	0.85[AMR][1000 genomes]
rs58823999	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60576941	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61507719	1.00[AMR][1000 genomes]
rs61555949	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6737917	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72854807	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72854810	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72854812	1.00[AMR][1000 genomes]
rs72854820	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72854827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72854842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72854858	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72868777	0.85[AMR][1000 genomes]
rs72868783	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72868787	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7575804	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv10373	chr2:31270402-31274383	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31262000-31272200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr2:31267400-31273200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr2:31270000-31271200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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