Variant report

Variant	rs72868777
Chromosome Location	chr2:31266081-31266082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs4377372	1.00[ASN][1000 genomes]
rs4494792	1.00[ASN][1000 genomes]
rs58027920	0.85[AMR][1000 genomes]
rs58823999	0.85[AMR][1000 genomes]
rs59961542	1.00[ASN][1000 genomes]
rs60576941	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61507719	0.85[AMR][1000 genomes]
rs6737917	0.85[AMR][1000 genomes]
rs72854810	0.85[AMR][1000 genomes]
rs72854812	0.85[AMR][1000 genomes]
rs72854820	0.85[AMR][1000 genomes]
rs72854827	0.85[AMR][1000 genomes]
rs72854842	0.85[AMR][1000 genomes]
rs72868783	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72868787	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73923381	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31251400-31270000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:31262000-31272200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:31265600-31266200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr2:31265600-31266200	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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