Variant report

Variant	rs72855524
Chromosome Location	chr6:39265275-39265276
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:39233505..39239976-chr6:39262109..39267318,6	MCF-7	breast:
2	chr6:39243650..39250520-chr6:39262135..39271800,15	MCF-7	breast:
3	chr6:39181537..39183525-chr6:39264253..39266272,2	K562	blood:
4	chr6:39265273..39267216-chr6:39269538..39271599,2	MCF-7	breast:
5	chr6:39131553..39138589-chr6:39265255..39275264,18	MCF-7	breast:
6	chr6:39252986..39258546-chr6:39261978..39266984,8	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1078911	0.94[EUR][1000 genomes]
rs10807204	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10807205	0.94[EUR][1000 genomes]
rs12194951	0.84[ASN][1000 genomes]
rs12197500	0.90[ASN][1000 genomes]
rs16891847	0.89[ASN][1000 genomes]
rs16891848	0.89[ASN][1000 genomes]
rs2395721	0.94[EUR][1000 genomes]
rs34102522	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9349112	0.83[ASN][1000 genomes]
rs9349113	0.83[ASN][1000 genomes]
rs9367000	0.81[ASN][1000 genomes]
rs9367001	0.81[ASN][1000 genomes]
rs9367002	0.84[ASN][1000 genomes]
rs9369111	0.83[ASN][1000 genomes]
rs9380846	0.81[ASN][1000 genomes]
rs9394581	0.83[ASN][1000 genomes]
rs9394582	0.86[ASN][1000 genomes]
rs9394583	0.94[EUR][1000 genomes]
rs9471058	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39257800-39265800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:39258000-39265600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:39261400-39267400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:39262600-39270600	Weak transcription	Colonic Mucosa	Colon
5	chr6:39262800-39265400	Enhancers	Fetal Stomach	stomach
6	chr6:39263000-39265400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr6:39263000-39266600	Enhancers	Placenta	Placenta
8	chr6:39263200-39265600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:39263200-39265600	Enhancers	Fetal Muscle Leg	muscle
10	chr6:39263400-39265400	Enhancers	Fetal Lung	lung
11	chr6:39263400-39265600	Enhancers	Right Atrium	heart
12	chr6:39263400-39266000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr6:39263600-39266000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:39263600-39266200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:39263800-39266000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:39263800-39267000	Enhancers	Liver	Liver
17	chr6:39264000-39265600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:39264200-39265600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:39264200-39265800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:39264400-39265600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:39264400-39266200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:39264600-39265400	Bivalent Enhancer	Fetal Heart	heart
23	chr6:39264800-39265400	Enhancers	Spleen	Spleen
24	chr6:39265000-39266600	Enhancers	Adipose Nuclei	Adipose
25	chr6:39265200-39265400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:39265200-39265800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:39265200-39266200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:39265200-39266400	Enhancers	HepG2	liver

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