Variant report

Variant	rs9380846
Chromosome Location	chr6:39257397-39257398
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:39240523..39244812-chr6:39255962..39259170,3	MCF-7	breast:
2	chr6:39252986..39258546-chr6:39261978..39266984,8	MCF-7	breast:
3	chr6:39224848..39227466-chr6:39255183..39257726,2	MCF-7	breast:
4	chr6:39245951..39248389-chr6:39255673..39257874,2	MCF-7	breast:
5	chr6:39195725..39198694-chr6:39256207..39259111,2	K562	blood:

Variant related genes	Relation type
ENSG00000164626	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12194951	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs12197500	0.91[ASN][1000 genomes]
rs12201021	0.81[ASN][1000 genomes]
rs12214300	0.81[ASN][1000 genomes]
rs12214342	0.81[ASN][1000 genomes]
rs16891847	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16891848	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1885619	0.91[JPT][hapmap]
rs2395721	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs2758862	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs2758875	0.90[ASN][1000 genomes]
rs34102522	0.81[ASN][1000 genomes]
rs34625110	0.81[ASN][1000 genomes]
rs6940480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72855524	0.81[ASN][1000 genomes]
rs9349112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9349113	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9367000	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9367001	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9367002	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9369111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394581	1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs9394582	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39248400-39263400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:39248400-39263400	Weak transcription	Right Atrium	heart
3	chr6:39251000-39258800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:39253800-39258000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:39256000-39257800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr6:39256400-39258800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:39256600-39258000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr6:39257000-39257600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr6:39257200-39257400	Enhancers	HUES6 Cell Line	embryonic stem cell

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