Variant report

Variant	rs72855818
Chromosome Location	chr2:36968442-36968443
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17019677	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2372712	0.84[AMR][1000 genomes]
rs3732071	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56870400	0.85[ASN][1000 genomes]
rs56997754	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57221455	0.82[ASN][1000 genomes]
rs57957607	0.93[ASN][1000 genomes]
rs7585989	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36942600-36968800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:36958000-36970800	Weak transcription	Ovary	ovary
3	chr2:36960200-36980400	Weak transcription	NHDF-Ad	bronchial
4	chr2:36961000-36971000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:36961800-36969600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:36965200-36979400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:36966800-36969600	Enhancers	Fetal Stomach	stomach
8	chr2:36967000-36968800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr2:36967000-36969000	Enhancers	Primary hematopoietic stem cells	blood
10	chr2:36967000-36969000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:36967200-36968600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr2:36967400-36968800	Enhancers	Primary T cells from cord blood	blood
13	chr2:36967600-36968600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr2:36967800-36968800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:36968000-36968800	Weak transcription	Fetal Lung	lung
16	chr2:36968200-36969000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:36968200-36969000	Bivalent Enhancer	Fetal Thymus	thymus
18	chr2:36968400-36968800	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr2:36968400-36968800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
20	chr2:36968400-36969600	Enhancers	Fetal Muscle Leg	muscle

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