Variant report

Variant	rs56870400
Chromosome Location	chr2:36981821-36981822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13392717	1.00[EUR][1000 genomes]
rs13418106	1.00[EUR][1000 genomes]
rs13418202	1.00[EUR][1000 genomes]
rs13418411	1.00[EUR][1000 genomes]
rs17019677	0.85[ASN][1000 genomes]
rs28537077	1.00[EUR][1000 genomes]
rs3732071	0.87[ASN][1000 genomes]
rs56997754	0.87[ASN][1000 genomes]
rs57096302	0.94[ASN][1000 genomes]
rs57221455	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57957607	0.88[ASN][1000 genomes]
rs6544035	1.00[EUR][1000 genomes]
rs6725491	1.00[EUR][1000 genomes]
rs72855818	0.85[ASN][1000 genomes]
rs7573447	1.00[EUR][1000 genomes]
rs7585989	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36971400-36992600	Weak transcription	Ovary	ovary
2	chr2:36971600-36982000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:36971600-36992600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:36973400-36987600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:36979400-36982200	Enhancers	H9 Cell Line	embryonic stem cell
6	chr2:36979400-36982200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:36980000-36989800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:36980200-36982200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr2:36980600-36982000	Enhancers	HMEC	breast
10	chr2:36980800-36982400	Enhancers	HepG2	liver
11	chr2:36981000-36982000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:36981200-36982000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr2:36981200-36982000	Enhancers	Pancreas	Pancrea
14	chr2:36981600-36982000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr2:36981600-36983600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:36981600-36983800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr2:36981800-36982200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr2:36981800-36982200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr2:36981800-36983600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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