Variant report

Variant	rs6544035
Chromosome Location	chr2:36987360-36987361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36983691..36986604-chr2:36986917..36989477,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13392717	1.00[EUR][1000 genomes]
rs13418106	1.00[EUR][1000 genomes]
rs13418202	1.00[EUR][1000 genomes]
rs13418411	1.00[EUR][1000 genomes]
rs28537077	1.00[EUR][1000 genomes]
rs56870400	1.00[EUR][1000 genomes]
rs57221455	1.00[EUR][1000 genomes]
rs6725491	1.00[EUR][1000 genomes]
rs7573447	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv3364052	chr2:36985996-36991463	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv820661	chr2:36986155-36991048	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv828920	chr2:36986155-36991048	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3435848	chr2:36986190-36991198	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3457538	chr2:36986217-36991195	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3457537	chr2:36986274-36991124	Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3457539	chr2:36986274-36991124	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv14542	chr2:36986295-36991029	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3351827	chr2:36986335-36991082	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv819346	chr2:36986371-36991076	Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1833994	chr2:36986549-36990671	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv1837268	chr2:36986549-36990671	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv1838053	chr2:36986549-36990671	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv1838793	chr2:36986549-36990671	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv1838829	chr2:36986549-36990671	Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv1841053	chr2:36986549-36990671	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv1842529	chr2:36986549-36990671	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv581469	chr2:36986549-36990671	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv1833720	chr2:36986549-36990958	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv1836881	chr2:36986549-36990958	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv1837119	chr2:36986549-36990958	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv1837339	chr2:36986549-36990958	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv1837480	chr2:36986549-36990958	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv1838573	chr2:36986549-36990958	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36971400-36992600	Weak transcription	Ovary	ovary
2	chr2:36971600-36992600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:36973400-36987600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:36980000-36989800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:36982200-36989400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:36982800-36996400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:36983800-36989400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:36984000-36988000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:36984000-36989800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr2:36984400-36987800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:36987000-36992200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links