Variant report

Variant	rs7573447
Chromosome Location	chr2:37049783-37049784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13392717	1.00[EUR][1000 genomes]
rs13418106	1.00[EUR][1000 genomes]
rs13418202	1.00[EUR][1000 genomes]
rs13418411	1.00[EUR][1000 genomes]
rs28537077	1.00[EUR][1000 genomes]
rs56870400	1.00[EUR][1000 genomes]
rs57221455	1.00[EUR][1000 genomes]
rs6544035	1.00[EUR][1000 genomes]
rs6725491	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1011014	chr2:37027819-37095895	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv999465	chr2:37029347-37095895	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37044200-37051000	Enhancers	Adipose Nuclei	Adipose
2	chr2:37045200-37051400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:37045600-37050000	Enhancers	Duodenum Mucosa	Duodenum
4	chr2:37047200-37050600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:37048200-37050000	Enhancers	Fetal Intestine Small	intestine
6	chr2:37048200-37050400	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr2:37048200-37050800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr2:37048800-37050000	Enhancers	Fetal Intestine Large	intestine
9	chr2:37048800-37051200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:37049000-37051400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:37049200-37050000	Enhancers	Colonic Mucosa	Colon
12	chr2:37049200-37050000	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr2:37049200-37051200	Weak transcription	Fetal Stomach	stomach
14	chr2:37049400-37050000	Weak transcription	Small Intestine	intestine
15	chr2:37049400-37051400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:37049600-37050600	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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