Variant report

Variant	rs72857759
Chromosome Location	chr4:78332685-78332686
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56937663	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58914640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60527636	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6533103	1.00[AMR][1000 genomes]
rs72856897	1.00[AMR][1000 genomes]
rs72857760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72859835	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72864721	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72864739	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72864746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72864759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72864760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72864761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72864762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv594698	chr4:78291876-78334483	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78331800-78333000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:78332400-78333400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr4:78332600-78333200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:78332600-78333600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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