Variant report
| Variant | rs72864760 |
|---|---|
| Chromosome Location | chr4:78310727-78310728 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:78298658..78300930-chr4:78308885..78310955,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs56937663 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58914640 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60527636 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6533103 | 1.00[AMR][1000 genomes] |
| rs72856897 | 1.00[AMR][1000 genomes] |
| rs72857759 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72857760 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72859835 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72864721 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72864739 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72864746 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72864759 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72864761 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72864762 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006017 | chr4:78139780-78312974 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1010450 | chr4:78182037-78317840 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1004824 | chr4:78188691-78312974 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv1845782 | chr4:78237955-78321598 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv829974 | chr4:78240718-78415642 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv594698 | chr4:78291876-78334483 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 7 | nsv967998 | chr4:78301212-78311035 | Weak transcription Enhancers Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:78308200-78311200 | Weak transcription | Fetal Intestine Large | intestine |
| 2 | chr4:78309200-78311800 | Weak transcription | Aorta | Aorta |
