Variant report

Variant	rs72861656
Chromosome Location	chr4:78090957-78090958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:78089519..78092376-chr4:78099146..78100867,2	MCF-7	breast:
2	chr4:78076120..78077897-chr4:78090608..78092538,2	K562	blood:
3	chr4:78089133..78091106-chr4:78093966..78096748,3	MCF-7	breast:
4	chr4:77995085..77997932-chr4:78090156..78092952,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118816	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4252872	1.00[AMR][1000 genomes]
rs60011271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6532790	1.00[AMR][1000 genomes]
rs72860203	1.00[AMR][1000 genomes]
rs72861617	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72863293	1.00[AMR][1000 genomes]
rs72866414	1.00[AMR][1000 genomes]
rs72866423	1.00[AMR][1000 genomes]
rs72866440	1.00[AMR][1000 genomes]
rs72866482	1.00[AMR][1000 genomes]
rs72866487	1.00[AMR][1000 genomes]
rs7656485	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78080000-78092800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:78080000-78093400	Weak transcription	Right Ventricle	heart
3	chr4:78080200-78094400	Weak transcription	Psoas Muscle	Psoas
4	chr4:78080400-78091400	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:78080400-78092400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr4:78080600-78091800	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:78080600-78091800	Strong transcription	Osteobl	bone
8	chr4:78080800-78091000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:78080800-78091400	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:78080800-78092400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:78081200-78092000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr4:78081200-78092200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:78081200-78092400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:78081200-78092400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr4:78081200-78092400	Strong transcription	Placenta	Placenta
16	chr4:78081200-78092400	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr4:78081200-78092600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:78081200-78092600	Strong transcription	Fetal Muscle Trunk	muscle
19	chr4:78081200-78093000	Strong transcription	Primary hematopoietic stem cells	blood
20	chr4:78081200-78093600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr4:78081400-78092600	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr4:78081800-78091000	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:78081800-78091800	Strong transcription	Adipose Nuclei	Adipose
24	chr4:78081800-78092400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:78082200-78092000	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr4:78083000-78092000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:78083000-78092200	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr4:78083000-78092400	Strong transcription	Stomach Smooth Muscle	stomach
29	chr4:78083200-78093600	Weak transcription	Small Intestine	intestine
30	chr4:78083400-78091800	Strong transcription	GM12878-XiMat	blood
31	chr4:78083400-78093000	Weak transcription	Fetal Heart	heart
32	chr4:78083400-78093600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr4:78083400-78095600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:78083400-78095600	Weak transcription	HepG2	liver
35	chr4:78084400-78091000	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr4:78084400-78091200	Weak transcription	Fetal Intestine Small	intestine
37	chr4:78084400-78092400	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr4:78084600-78097800	Weak transcription	Esophagus	oesophagus
39	chr4:78084600-78102200	Weak transcription	Spleen	Spleen
40	chr4:78084800-78091600	Strong transcription	Dnd41	blood
41	chr4:78084800-78092400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr4:78085000-78091800	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr4:78085200-78092200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr4:78085600-78092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr4:78085600-78092200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr4:78085600-78092200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr4:78085800-78096600	Weak transcription	Brain Angular Gyrus	brain
48	chr4:78086200-78092800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr4:78086200-78095600	Weak transcription	Ovary	ovary
50	chr4:78086400-78092000	Genic enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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