Variant report

Variant	rs4252872
Chromosome Location	chr4:77979863-77979864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:77979447-77979889	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:77979701..77986849-chr4:77990863..77998763,10	MCF-7	breast:
2	chr4:77975545..77980821-chr4:77994993..77998408,5	MCF-7	breast:
3	chr4:77971112..77973891-chr4:77979862..77982269,2	K562	blood:

Variant related genes	Relation type
CCNI	TF binding region
ENSG00000118816	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs4252880	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4252931	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60011271	1.00[AMR][1000 genomes]
rs6532790	1.00[ASW][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72858635	0.81[AFR][1000 genomes]
rs72858646	0.81[AFR][1000 genomes]
rs72858695	0.85[ASN][1000 genomes]
rs72860203	1.00[AMR][1000 genomes]
rs72860205	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs72860219	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72860221	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72860222	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72860225	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72861617	1.00[AMR][1000 genomes]
rs72861656	1.00[AMR][1000 genomes]
rs72863293	1.00[AMR][1000 genomes]
rs7656485	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77937400-77981400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:77944200-77983200	Weak transcription	Small Intestine	intestine
3	chr4:77957000-77993600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:77957000-77994200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:77960400-77983000	Weak transcription	Gastric	stomach
6	chr4:77963800-77981800	Strong transcription	GM12878-XiMat	blood
7	chr4:77964600-77989000	Strong transcription	Fetal Thymus	thymus
8	chr4:77965800-77981600	Weak transcription	Right Atrium	heart
9	chr4:77966000-77981400	Strong transcription	Primary B cells from cord blood	blood
10	chr4:77966200-77980600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:77966200-77988600	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr4:77966400-77987600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:77966600-77992800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:77966800-77988600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr4:77967000-77988600	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr4:77967200-77980000	Strong transcription	Duodenum Mucosa	Duodenum
17	chr4:77967200-77981200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr4:77967200-77985600	Strong transcription	NH-A	brain
19	chr4:77967200-77987600	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr4:77967200-77987600	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr4:77967200-77987600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr4:77967200-77987600	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr4:77967200-77987600	Strong transcription	Placenta	Placenta
24	chr4:77967200-77988200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr4:77967200-77988600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr4:77967200-77988600	Strong transcription	Dnd41	blood
27	chr4:77967200-77988800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr4:77967200-77989200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:77967200-77989200	Strong transcription	Primary B cells from peripheral blood	blood
30	chr4:77967200-77989600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr4:77967200-77993200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:77967400-77988800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr4:77967400-77990400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr4:77967600-77981200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr4:77967600-77988200	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr4:77967800-77987800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr4:77968400-77985000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr4:77968800-77980000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr4:77969000-77987800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr4:77969800-77981000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr4:77969800-77994400	Weak transcription	Stomach Mucosa	stomach
42	chr4:77970000-77983000	Weak transcription	Esophagus	oesophagus
43	chr4:77970000-77984800	Weak transcription	Right Ventricle	heart
44	chr4:77970000-77988600	Weak transcription	Pancreas	Pancrea
45	chr4:77970400-77994800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr4:77970800-77983000	Weak transcription	Spleen	Spleen
47	chr4:77971000-77981200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr4:77971000-77987600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr4:77972400-77987000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr4:77972600-77989600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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