Variant report

Variant	rs72860225
Chromosome Location	chr4:77989529-77989530
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:77989395-77990067	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77988491..77990054-chr4:77995866..77998431,2	MCF-7	breast:
2	chr4:77864554..77866715-chr4:77988716..77991031,2	K562	blood:

Variant related genes	Relation type
CCNI	TF binding region
ENSG00000118816	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4252756	1.00[AMR][1000 genomes]
rs4252872	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4252880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4252931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57498549	0.80[AFR][1000 genomes]
rs6532790	0.96[AFR][1000 genomes]
rs72858646	0.85[AFR][1000 genomes]
rs72858695	0.85[ASN][1000 genomes]
rs72860205	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72860219	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72860221	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72860222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7656485	0.88[AFR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77957000-77993600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:77957000-77994200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:77966600-77992800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:77967200-77989600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:77967200-77993200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:77967400-77990400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:77969800-77994400	Weak transcription	Stomach Mucosa	stomach
8	chr4:77970400-77994800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:77972600-77989600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:77973800-77994400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr4:77974000-77994800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:77975800-77995600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:77976400-77993000	Weak transcription	Fetal Brain Male	brain
14	chr4:77976600-77992600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr4:77977800-77991800	Weak transcription	Fetal Heart	heart
16	chr4:77980000-77994800	Weak transcription	Colonic Mucosa	Colon
17	chr4:77981400-77992400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr4:77981400-77994000	Weak transcription	Hela-S3	cervix
19	chr4:77981800-77990200	Weak transcription	Right Atrium	heart
20	chr4:77983200-77989600	Strong transcription	GM12878-XiMat	blood
21	chr4:77983600-77990800	Weak transcription	HepG2	liver
22	chr4:77983600-77992000	Weak transcription	Brain Hippocampus Middle	brain
23	chr4:77983600-77994000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr4:77983600-77994800	Weak transcription	Esophagus	oesophagus
25	chr4:77983600-77995400	Weak transcription	Gastric	stomach
26	chr4:77983800-77993200	Weak transcription	Aorta	Aorta
27	chr4:77984400-77993800	Weak transcription	A549	lung
28	chr4:77984400-77993800	Weak transcription	HSMMtube	muscle
29	chr4:77985200-77990200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr4:77985200-77992600	Weak transcription	NHLF	lung
31	chr4:77985600-77989600	Weak transcription	Brain Anterior Caudate	brain
32	chr4:77985600-77993600	Weak transcription	Brain Angular Gyrus	brain
33	chr4:77985800-77989600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr4:77985800-77989800	Strong transcription	Primary B cells from cord blood	blood
35	chr4:77985800-77993600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:77985800-77994200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr4:77986000-77993600	Weak transcription	Brain Substantia Nigra	brain
38	chr4:77986000-77994600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr4:77986200-77990200	Weak transcription	Ovary	ovary
40	chr4:77986200-77990200	Weak transcription	Spleen	Spleen
41	chr4:77986200-77994400	Weak transcription	Right Ventricle	heart
42	chr4:77986400-77992800	Weak transcription	Brain Germinal Matrix	brain
43	chr4:77986800-77991000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr4:77987200-77990200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr4:77987200-77990200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr4:77987400-77989600	Weak transcription	Colon Smooth Muscle	Colon
47	chr4:77987400-77990200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:77987400-77990800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr4:77987400-77991000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr4:77987400-77991800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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