Variant report

Variant	rs72858646
Chromosome Location	chr4:77896481-77896482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77894869..77896683-chr4:77901568..77903976,2	MCF-7	breast:
2	chr4:77877093..77879244-chr4:77894823..77897466,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs4252872	0.81[AFR][1000 genomes]
rs4252880	0.85[AFR][1000 genomes]
rs4252931	0.85[AFR][1000 genomes]
rs59044450	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6532790	0.81[AFR][1000 genomes]
rs72858635	0.85[AFR][1000 genomes]
rs72858695	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72860205	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72860219	0.89[AFR][1000 genomes]
rs72860221	0.89[AFR][1000 genomes]
rs72860222	0.85[AFR][1000 genomes]
rs72860225	0.85[AFR][1000 genomes]
rs7656485	0.89[AFR][1000 genomes]
rs904042	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1810313	chr4:77778670-77902099	Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77872600-77899200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr4:77872600-77900400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:77873000-77899200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:77876800-77906000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:77878800-77899200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:77879000-77898400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:77879600-77904200	Weak transcription	Gastric	stomach
8	chr4:77881600-77899200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:77882200-77905200	Weak transcription	Fetal Intestine Large	intestine
10	chr4:77884800-77899200	Weak transcription	Placenta	Placenta
11	chr4:77884800-77899200	Weak transcription	Small Intestine	intestine
12	chr4:77884800-77904200	Weak transcription	Pancreas	Pancrea
13	chr4:77886200-77898200	Weak transcription	Primary T cells from cord blood	blood
14	chr4:77886200-77898200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:77886200-77899200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:77886400-77898400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:77887600-77898400	Weak transcription	HMEC	breast
18	chr4:77887600-77899200	Weak transcription	Brain Anterior Caudate	brain
19	chr4:77888000-77899400	Weak transcription	Lung	lung
20	chr4:77890200-77901400	Weak transcription	Colon Smooth Muscle	Colon
21	chr4:77891200-77905600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:77891400-77899200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr4:77891400-77899400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr4:77891400-77899400	Weak transcription	Left Ventricle	heart
25	chr4:77891600-77897600	Weak transcription	K562	blood
26	chr4:77891600-77899400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr4:77891600-77907000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr4:77891800-77901800	Weak transcription	Brain Hippocampus Middle	brain
29	chr4:77891800-77905200	Weak transcription	Brain Substantia Nigra	brain
30	chr4:77892000-77898200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr4:77892000-77898800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr4:77892000-77899600	Weak transcription	Fetal Brain Female	brain
33	chr4:77892000-77902000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr4:77893000-77898400	Strong transcription	GM12878-XiMat	blood
35	chr4:77893000-77899200	Weak transcription	Colonic Mucosa	Colon
36	chr4:77893000-77906600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr4:77893200-77918800	Weak transcription	A549	lung
38	chr4:77893400-77899400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr4:77893400-77899400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr4:77893400-77901600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr4:77893400-77901800	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr4:77893600-77899200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr4:77893600-77901800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr4:77893600-77902400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr4:77893800-77901600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr4:77893800-77901600	Weak transcription	Fetal Brain Male	brain
47	chr4:77894000-77898400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr4:77894000-77898400	Weak transcription	Fetal Kidney	kidney
49	chr4:77894000-77899200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr4:77894000-77901600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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